IL_6Z6J_069

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCUUC*GGAAUA

Length

11 nucleotides

Bulged bases

6Z6J|1|C1|U|1629

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6J_069 not in the Motif Atlas

Geometric match to IL_5TBW_066

Geometric discrepancy: 0.2531

The information below is about IL_5TBW_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48431.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6Z6J|1|C1|U|1627
6Z6J|1|C1|C|1628
6Z6J|1|C1|U|1629
6Z6J|1|C1|U|1630
6Z6J|1|C1|C|1631
*
6Z6J|1|C1|G|1811
6Z6J|1|C1|G|1812
6Z6J|1|C1|A|1813
6Z6J|1|C1|A|1814
6Z6J|1|C1|U|1815
6Z6J|1|C1|A|1816

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LZ

60S ribosomal protein L27-A