IL_6Z6J_070

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6J_070 not in the Motif Atlas

Geometric match to IL_7RQB_095

Geometric discrepancy: 0.2177

The information below is about IL_7RQB_095

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6Z6J|1|C1|U|1645
6Z6J|1|C1|G|1646
6Z6J|1|C1|A|1647
6Z6J|1|C1|A|1648
6Z6J|1|C1|U|1649
*
6Z6J|1|C1|A|1806
6Z6J|1|C1|G|1807
6Z6J|1|C1|G|1808
6Z6J|1|C1|A|1809
6Z6J|1|C1|A|1810

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LA

60S ribosomal protein L2-A

Chain LZ

60S ribosomal protein L27-A

Chain Lg

60S ribosomal protein L34-A