IL_6Z6J_089

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6J_089 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.112

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6Z6J|1|C1|U|2211
6Z6J|1|C1|C|2212
6Z6J|1|C1|A|2213
6Z6J|1|C1|A|2214
6Z6J|1|C1|A|2215
6Z6J|1|C1|G|2216
6Z6J|1|C1|U|2217
*
6Z6J|1|C1|A|2228
6Z6J|1|C1|A|2229
6Z6J|1|C1|C|2230
6Z6J|1|C1|C|2231
6Z6J|1|C1|A|2232
6Z6J|1|C1|A|2233
6Z6J|1|C1|G|2234

Current chains

Chain C1

25S rRNA

Nearby chains

Chain Li

60S ribosomal protein L36-A

Chain Lo

60S ribosomal protein L42-A