IL_6Z6J_091

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

6Z6J|1|C1|A|2281, 6Z6J|1|C1|C|2287, 6Z6J|1|C1|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6J_091 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.1129

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6Z6J|1|C1|C|2277
6Z6J|1|C1|C|2278
6Z6J|1|C1|A|2279
6Z6J|1|C1|A|2280
6Z6J|1|C1|A|2281
6Z6J|1|C1|U|2282
6Z6J|1|C1|G|2283
6Z6J|1|C1|C|2284
6Z6J|1|C1|C|2285
6Z6J|1|C1|U|2286
6Z6J|1|C1|C|2287
6Z6J|1|C1|G|2288
*
6Z6J|1|C1|C|2304
6Z6J|1|C1|G|2305
6Z6J|1|C1|C|2306
6Z6J|1|C1|G|2307

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C2

Small subunit ribosomal RNA; SSU rRNA

Chain Ln

60S ribosomal protein L41-B