IL_6Z6J_109

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

6Z6J|1|C1|G|2945, 6Z6J|1|C1|A|2946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6J_109 not in the Motif Atlas

Geometric match to IL_5TBW_108

Geometric discrepancy: 0.122

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6Z6J|1|C1|C|2879
6Z6J|1|C1|U|2880
6Z6J|1|C1|C|2881
*
6Z6J|1|C1|G|2943
6Z6J|1|C1|U|2944
6Z6J|1|C1|G|2945
6Z6J|1|C1|A|2946
6Z6J|1|C1|G|2947

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23-A