IL_6Z6J_121

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

6Z6J|1|C1|A|3130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6J_121 not in the Motif Atlas

Homologous match to IL_8C3A_129

Geometric discrepancy: 0.0972

The information below is about IL_8C3A_129

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

6Z6J|1|C1|A|3103
6Z6J|1|C1|U|3104
6Z6J|1|C1|U|3105
6Z6J|1|C1|A|3106
6Z6J|1|C1|U|3107
*
6Z6J|1|C1|A|3127
6Z6J|1|C1|G|3128
6Z6J|1|C1|A|3129
6Z6J|1|C1|A|3130
6Z6J|1|C1|U|3131

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9-A

Chain LO

60S ribosomal protein L16-A

Chain Lm

Ubiquitin-60S ribosomal protein L40