IL_6Z6J_137

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

6Z6J|1|C1|U|3354, 6Z6J|1|C1|U|3355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6J_137 not in the Motif Atlas

Homologous match to IL_8C3A_142

Geometric discrepancy: 0.1413

The information below is about IL_8C3A_142

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6Z6J|1|C1|C|3349
6Z6J|1|C1|C|3350
*
6Z6J|1|C1|G|3353
6Z6J|1|C1|U|3354
6Z6J|1|C1|U|3355
6Z6J|1|C1|G|3356

Current chains

Chain C1

25S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8-A