IL_6Z6J_165

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAG*CGAGGAAC

Length

11 nucleotides

Bulged bases

6Z6J|1|C2|A|541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6J_165 not in the Motif Atlas

Geometric match to IL_7RQB_082

Geometric discrepancy: 0.2792

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6Z6J|1|C2|G|514
6Z6J|1|C2|A|515
6Z6J|1|C2|G|516
*
6Z6J|1|C2|C|536
6Z6J|1|C2|G|537
6Z6J|1|C2|A|538
6Z6J|1|C2|G|539
6Z6J|1|C2|G|540
6Z6J|1|C2|A|541
6Z6J|1|C2|A|542
6Z6J|1|C2|C|543

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9-A

Chain Se

40S ribosomal protein S30-A