IL_6Z6J_178

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUU*AUC

Length

7 nucleotides

Bulged bases

6Z6J|1|C2|U|820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6J_178 not in the Motif Atlas

Homologous match to IL_4V88_427

Geometric discrepancy: 0.4417

The information below is about IL_4V88_427

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

6Z6J|1|C2|G|819
6Z6J|1|C2|U|820
6Z6J|1|C2|U|821
6Z6J|1|C2|U|822
*
6Z6J|1|C2|A|850
6Z6J|1|C2|U|851
6Z6J|1|C2|C|852

Current chains

Chain C2

18S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19-A