IL_6Z6J_185

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUCAG*CUUGGAUU

Length

13 nucleotides

Bulged bases

6Z6J|1|C2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6J_185 not in the Motif Atlas

Geometric match to IL_4V88_434

Geometric discrepancy: 0.1343

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6Z6J|1|C2|G|895
6Z6J|1|C2|U|896
6Z6J|1|C2|C|897
6Z6J|1|C2|A|898
6Z6J|1|C2|G|899
*
6Z6J|1|C2|C|910
6Z6J|1|C2|U|911
6Z6J|1|C2|U|912
6Z6J|1|C2|G|913
6Z6J|1|C2|G|914
6Z6J|1|C2|A|915
6Z6J|1|C2|U|916
6Z6J|1|C2|U|917

Current chains

Chain C2

18S rRNA

Nearby chains

Chain C1

Large subunit ribosomal RNA; LSU rRNA

Chain SB

40S ribosomal protein S1-A

Chain SO

40S ribosomal protein S14-A