3D structure

PDB id
6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CGA*UCUUUGG
Length
10 nucleotides
Bulged bases
6Z6J|1|C2|C|1096, 6Z6J|1|C2|U|1098, 6Z6J|1|C2|G|1100
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Z6J_188 not in the Motif Atlas
Homologous match to IL_4V88_437
Geometric discrepancy: 0.1734
The information below is about IL_4V88_437
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_62898.1
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

6Z6J|1|C2|C|1034
6Z6J|1|C2|G|1035
6Z6J|1|C2|A|1036
*
6Z6J|1|C2|U|1095
6Z6J|1|C2|C|1096
6Z6J|1|C2|U|1097
6Z6J|1|C2|U|1098
6Z6J|1|C2|U|1099
6Z6J|1|C2|G|1100
6Z6J|1|C2|G|1101

Current chains

Chain C2
18S rRNA

Nearby chains

Chain SC
40S ribosomal protein S2
Chain SL
40S ribosomal protein S11-A
Chain SN
40S ribosomal protein S13
Chain SV
40S ribosomal protein S21-A
Chain SW
40S ribosomal protein S22-A
Chain SX
40S ribosomal protein S23-A
Chain Sb
40S ribosomal protein S27-A

Coloring options:


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