IL_6Z6J_199
3D structure
- PDB id
- 6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AUAAGGAUUG*CUUGAUUU
- Length
- 18 nucleotides
- Bulged bases
- 6Z6J|1|C2|G|1228
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Z6J_199 not in the Motif Atlas
- Homologous match to IL_4V88_447
- Geometric discrepancy: 0.506
- The information below is about IL_4V88_447
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_34780.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6Z6J|1|C2|A|1224
6Z6J|1|C2|U|1225
6Z6J|1|C2|A|1226
6Z6J|1|C2|A|1227
6Z6J|1|C2|G|1228
6Z6J|1|C2|G|1229
6Z6J|1|C2|A|1230
6Z6J|1|C2|U|1231
6Z6J|1|C2|U|1232
6Z6J|1|C2|G|1233
*
6Z6J|1|C2|C|1252
6Z6J|1|C2|U|1253
6Z6J|1|C2|U|1254
6Z6J|1|C2|G|1255
6Z6J|1|C2|A|1256
6Z6J|1|C2|U|1257
6Z6J|1|C2|U|1258
6Z6J|1|C2|U|1259
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SK
- 40S ribosomal protein S10-A
- Chain SM
- 40S ribosomal protein S12
- Chain Sd
- 40S ribosomal protein S29-A
- Chain Sf
- Ubiquitin-40S ribosomal protein S31
Coloring options: