3D structure

PDB id
6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GCCAGCGA*UUGUGAAAC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Z6J_211 not in the Motif Atlas
Homologous match to IL_4V88_459
Geometric discrepancy: 0.1285
The information below is about IL_4V88_459
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_10447.1
Basepair signature
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
Number of instances in this motif group
2

Unit IDs

6Z6J|1|C2|G|1480
6Z6J|1|C2|C|1481
6Z6J|1|C2|C|1482
6Z6J|1|C2|A|1483
6Z6J|1|C2|G|1484
6Z6J|1|C2|C|1485
6Z6J|1|C2|G|1486
6Z6J|1|C2|A|1487
*
6Z6J|1|C2|U|1519
6Z6J|1|C2|U|1520
6Z6J|1|C2|G|1521
6Z6J|1|C2|U|1522
6Z6J|1|C2|G|1523
6Z6J|1|C2|A|1524
6Z6J|1|C2|A|1525
6Z6J|1|C2|A|1526
6Z6J|1|C2|C|1527

Current chains

Chain C2
18S rRNA

Nearby chains

Chain SD
40S ribosomal protein S3
Chain SF
40S ribosomal protein S5
Chain SQ
40S ribosomal protein S16-A
Chain ST
40S ribosomal protein S19-A
Chain SU
40S ribosomal protein S20
Chain SZ
40S ribosomal protein S25-A
Chain Sd
40S ribosomal protein S29-A

Coloring options:


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