IL_6Z6J_226

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6J_226 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.1205

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6Z6J|1|C2|A|1678
6Z6J|1|C2|G|1679
6Z6J|1|C2|G|1680
6Z6J|1|C2|A|1681
6Z6J|1|C2|U|1682
*
6Z6J|1|C2|A|1719
6Z6J|1|C2|G|1720
6Z6J|1|C2|A|1721
6Z6J|1|C2|A|1722
6Z6J|1|C2|U|1723

Current chains

Chain C2

18S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24-A

Chain SG

40S ribosomal protein S6-A

Chain SI

40S ribosomal protein S8-A