IL_6Z6J_239

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GG*UUUC

Length

6 nucleotides

Bulged bases

6Z6J|1|C1|U|1820, 6Z6J|1|C1|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6J_239 not in the Motif Atlas

Homologous match to IL_8P9A_293

Geometric discrepancy: 0.303

The information below is about IL_8P9A_293

Detailed Annotation

Major groove platform related

Broad Annotation

Major groove platform related

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

6Z6J|1|C1|G|1623
6Z6J|1|C1|G|1624
*
6Z6J|1|C1|U|1819
6Z6J|1|C1|U|1820
6Z6J|1|C1|U|1821
6Z6J|1|C1|C|1822

Current chains

Chain C1

25S rRNA

Nearby chains

Chain Lg

60S ribosomal protein L34-A

Chain Lk

60S ribosomal protein L38