IL_6Z6J_242

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

6Z6J|1|C1|A|2208, 6Z6J|1|C1|U|2209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6J_242 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.3712

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6Z6J|1|C1|G|2206
6Z6J|1|C1|A|2207
6Z6J|1|C1|A|2208
6Z6J|1|C1|U|2209
6Z6J|1|C1|G|2210
*
6Z6J|1|C1|C|2235
6Z6J|1|C1|G|2236
6Z6J|1|C1|C|2237

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C2

Small subunit ribosomal RNA; SSU rRNA

Chain LA

60S ribosomal protein L2-A