IL_6Z6K_034

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGG*UAAUC

Length

8 nucleotides

Bulged bases

6Z6K|1|C1|G|908, 6Z6K|1|C1|A|920, 6Z6K|1|C1|A|921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6K_034 not in the Motif Atlas

Homologous match to IL_8C3A_036

Geometric discrepancy: 0.0594

The information below is about IL_8C3A_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90991.8

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

6Z6K|1|C1|G|907
6Z6K|1|C1|G|908
6Z6K|1|C1|G|909
*
6Z6K|1|C1|U|919
6Z6K|1|C1|A|920
6Z6K|1|C1|A|921
6Z6K|1|C1|U|922
6Z6K|1|C1|C|923

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LA

60S ribosomal protein L2-A

Chain LN

60S ribosomal protein L15-A

Chain LP

60S ribosomal protein L17-A

Chain Lj

60S ribosomal protein L37-A