IL_6Z6K_040

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AA*UUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6K_040 not in the Motif Atlas

Geometric match to IL_6DLR_003

Geometric discrepancy: 0.173

The information below is about IL_6DLR_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

6Z6K|1|C1|A|997
6Z6K|1|C1|A|998
*
6Z6K|1|C1|U|1050
6Z6K|1|C1|U|1051
6Z6K|1|C1|U|1052

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C4

5S ribosomal RNA; 5S rRNA

Chain LD

60S ribosomal protein L5

Chain LI

60S ribosomal protein L10

Chain LT

60S ribosomal protein L21-A