IL_6Z6K_063

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

6Z6K|1|C1|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6K_063 not in the Motif Atlas

Geometric match to IL_7RQB_051

Geometric discrepancy: 0.2229

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

6Z6K|1|C1|U|1501
6Z6K|1|C1|C|1502
6Z6K|1|C1|A|1503
6Z6K|1|C1|A|1504
6Z6K|1|C1|C|1505
*
6Z6K|1|C1|G|1513
6Z6K|1|C1|G|1514
6Z6K|1|C1|A|1515

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LP

60S ribosomal protein L17-A

Chain LR

60S ribosomal protein L19-A

Chain Ll

60S ribosomal protein L39