IL_6Z6K_099
3D structure
- PDB id
- 6Z6K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CAU*AGUAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Z6K_099 not in the Motif Atlas
- Homologous match to IL_8C3A_108
- Geometric discrepancy: 0.1592
- The information below is about IL_8C3A_108
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_71241.2
- Basepair signature
- cWW-cWW-tSH-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
6Z6K|1|C1|C|2666
6Z6K|1|C1|A|2667
6Z6K|1|C1|U|2668
*
6Z6K|1|C1|A|2686
6Z6K|1|C1|G|2687
6Z6K|1|C1|U|2688
6Z6K|1|C1|A|2689
6Z6K|1|C1|G|2690
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain C4
- 5S ribosomal RNA; 5S rRNA
- Chain C5
- Protein LSO2
- Chain LD
- 60S ribosomal protein L5
- Chain LJ
- 60S ribosomal protein L11-A
- Chain LT
- 60S ribosomal protein L21-A
Coloring options: