IL_6Z6K_115

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

6Z6K|1|C1|A|3142, 6Z6K|1|C1|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6K_115 not in the Motif Atlas

Homologous match to IL_5TBW_114

Geometric discrepancy: 0.0905

The information below is about IL_5TBW_114

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6Z6K|1|C1|C|3004
6Z6K|1|C1|A|3005
6Z6K|1|C1|A|3006
6Z6K|1|C1|U|3007
*
6Z6K|1|C1|A|3139
6Z6K|1|C1|G|3140
6Z6K|1|C1|A|3141
6Z6K|1|C1|A|3142
6Z6K|1|C1|C|3143
6Z6K|1|C1|G|3144

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L16-A