IL_6Z6K_136

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6K_136 not in the Motif Atlas

Homologous match to IL_8C3A_141

Geometric discrepancy: 0.2291

The information below is about IL_8C3A_141

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6Z6K|1|C1|A|3342
6Z6K|1|C1|G|3343
6Z6K|1|C1|A|3344
6Z6K|1|C1|G|3345
*
6Z6K|1|C1|C|3360
6Z6K|1|C1|G|3361
6Z6K|1|C1|A|3362
6Z6K|1|C1|U|3363

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19-A

Chain LU

60S ribosomal protein L22-A

Chain SI

40S ribosomal protein S8-A