IL_6Z6K_180
3D structure
- PDB id
- 6Z6K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GAC*GUUU
- Length
- 7 nucleotides
- Bulged bases
- 6Z6K|1|C2|U|959
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Z6K_180 not in the Motif Atlas
- Geometric match to IL_3TD0_005
- Geometric discrepancy: 0.2376
- The information below is about IL_3TD0_005
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_57744.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
6Z6K|1|C2|G|868
6Z6K|1|C2|A|869
6Z6K|1|C2|C|870
*
6Z6K|1|C2|G|957
6Z6K|1|C2|U|958
6Z6K|1|C2|U|959
6Z6K|1|C2|U|960
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain Lc
- 60S ribosomal protein L30
- Chain SN
- 40S ribosomal protein S13
- Chain SW
- 40S ribosomal protein S22-A
- Chain Sb
- 40S ribosomal protein S27-A
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