IL_6Z6K_198

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUCC*GUU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6K_198 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3091

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99358.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

6Z6K|1|C2|G|1213
6Z6K|1|C2|U|1214
6Z6K|1|C2|C|1215
6Z6K|1|C2|C|1216
*
6Z6K|1|C2|G|1448
6Z6K|1|C2|U|1449
6Z6K|1|C2|U|1450

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SK

40S ribosomal protein S10-A

Chain Sd

40S ribosomal protein S29-A