IL_6Z6K_205

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6K_205 not in the Motif Atlas

Homologous match to IL_4V88_453

Geometric discrepancy: 0.1252

The information below is about IL_4V88_453

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

6Z6K|1|C2|U|1290
6Z6K|1|C2|G|1291
6Z6K|1|C2|G|1292
*
6Z6K|1|C2|C|1323
6Z6K|1|C2|G|1324
6Z6K|1|C2|A|1325

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SA

40S ribosomal protein S0-A

Chain SC

40S ribosomal protein S2

Chain SD

40S ribosomal protein S3

Chain SR

40S ribosomal protein S17-A