IL_6Z6K_208

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

6Z6K|1|C2|A|1346, 6Z6K|1|C2|U|1347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6K_208 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.1979

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

6Z6K|1|C2|A|1345
6Z6K|1|C2|A|1346
6Z6K|1|C2|U|1347
6Z6K|1|C2|A|1348
*
6Z6K|1|C2|U|1377
6Z6K|1|C2|U|1378
6Z6K|1|C2|C|1379
6Z6K|1|C2|U|1380

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SQ

40S ribosomal protein S16-A

Chain SU

40S ribosomal protein S20