IL_6Z6K_215

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6Z6K|1|C2|C|1637, 6Z6K|1|C2|A|1766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6K_215 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.1536

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

6Z6K|1|C2|C|1636
6Z6K|1|C2|C|1637
6Z6K|1|C2|G|1638
*
6Z6K|1|C2|C|1764
6Z6K|1|C2|A|1765
6Z6K|1|C2|A|1766
6Z6K|1|C2|G|1767

Current chains

Chain C2

18S rRNA

Nearby chains

Chain C5

Protein LSO2

Chain SC

40S ribosomal protein S2

Chain SO

40S ribosomal protein S14-A

Chain Sa

40S ribosomal protein S26-B