IL_6Z6K_227
3D structure
- PDB id
- 6Z6K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- ACGCAGCGAAAUGCGAUACGU*AAUCU
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Z6K_227 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.0812
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
6Z6K|1|C3|A|44
6Z6K|1|C3|C|45
6Z6K|1|C3|G|46
6Z6K|1|C3|C|47
6Z6K|1|C3|A|48
6Z6K|1|C3|G|49
6Z6K|1|C3|C|50
6Z6K|1|C3|G|51
6Z6K|1|C3|A|52
6Z6K|1|C3|A|53
6Z6K|1|C3|A|54
6Z6K|1|C3|U|55
6Z6K|1|C3|G|56
6Z6K|1|C3|C|57
6Z6K|1|C3|G|58
6Z6K|1|C3|A|59
6Z6K|1|C3|U|60
6Z6K|1|C3|A|61
6Z6K|1|C3|C|62
6Z6K|1|C3|G|63
6Z6K|1|C3|U|64
*
6Z6K|1|C3|A|96
6Z6K|1|C3|A|97
6Z6K|1|C3|U|98
6Z6K|1|C3|C|99
6Z6K|1|C3|U|100
Current chains
- Chain C3
- 5.8S rRNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LX
- 60S ribosomal protein L25
- Chain Lh
- 60S ribosomal protein L35-A
- Chain Lj
- 60S ribosomal protein L37-A
- Chain Ll
- 60S ribosomal protein L39
Coloring options: