IL_6Z6K_235
3D structure
- PDB id
- 6Z6K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- ACCGAGUAG*CGAAACU
- Length
- 16 nucleotides
- Bulged bases
- 6Z6K|1|C4|C|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Z6K_235 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.0971
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6Z6K|1|C4|A|72
6Z6K|1|C4|C|73
6Z6K|1|C4|C|74
6Z6K|1|C4|G|75
6Z6K|1|C4|A|76
6Z6K|1|C4|G|77
6Z6K|1|C4|U|78
6Z6K|1|C4|A|79
6Z6K|1|C4|G|80
*
6Z6K|1|C4|C|100
6Z6K|1|C4|G|101
6Z6K|1|C4|A|102
6Z6K|1|C4|A|103
6Z6K|1|C4|A|104
6Z6K|1|C4|C|105
6Z6K|1|C4|U|106
Current chains
- Chain C4
- 5S rRNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LF
- 60S ribosomal protein L7-A
- Chain LI
- 60S ribosomal protein L10
- Chain LS
- 60S ribosomal protein L20-A
- Chain LT
- 60S ribosomal protein L21-A
Coloring options: