IL_6Z6K_244
3D structure
- PDB id
- 6Z6K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UUGUCAG*CUUGGAUUUA
- Length
- 17 nucleotides
- Bulged bases
- 6Z6K|1|C2|G|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Z6K_244 not in the Motif Atlas
- Homologous match to IL_8P9A_422
- Geometric discrepancy: 0.1765
- The information below is about IL_8P9A_422
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_57741.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
6Z6K|1|C2|U|893
6Z6K|1|C2|U|894
6Z6K|1|C2|G|895
6Z6K|1|C2|U|896
6Z6K|1|C2|C|897
6Z6K|1|C2|A|898
6Z6K|1|C2|G|899
*
6Z6K|1|C2|C|910
6Z6K|1|C2|U|911
6Z6K|1|C2|U|912
6Z6K|1|C2|G|913
6Z6K|1|C2|G|914
6Z6K|1|C2|A|915
6Z6K|1|C2|U|916
6Z6K|1|C2|U|917
6Z6K|1|C2|U|918
6Z6K|1|C2|A|919
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain SB
- 40S ribosomal protein S1-A
- Chain SO
- 40S ribosomal protein S14-A
Coloring options: