IL_6Z6L_097

3D structure

PDB id

6Z6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human CCDC124 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

6Z6L|1|L5|G|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6L_097 not in the Motif Atlas

Geometric match to IL_4RUM_001

Geometric discrepancy: 0.202

The information below is about IL_4RUM_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6Z6L|1|L5|G|2542
6Z6L|1|L5|A|2543
6Z6L|1|L5|G|2544
6Z6L|1|L5|U|2545
6Z6L|1|L5|G|2546
6Z6L|1|L5|G|2547
*
6Z6L|1|L5|C|2772
6Z6L|1|L5|G|2773
6Z6L|1|L5|C|2774

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain Lk

60S ribosomal protein L38