IL_6Z6L_169

3D structure

PDB id

6Z6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human CCDC124 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCA*UC

Length

5 nucleotides

Bulged bases

6Z6L|1|L5|C|5013

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6L_169 not in the Motif Atlas

Geometric match to IL_7RQB_035

Geometric discrepancy: 0.2636

The information below is about IL_7RQB_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

6Z6L|1|L5|G|5012
6Z6L|1|L5|C|5013
6Z6L|1|L5|A|5014
*
6Z6L|1|L5|U|5035
6Z6L|1|L5|C|5036

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24