IL_6Z6L_258

3D structure

PDB id

6Z6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human CCDC124 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6Z6L|1|S2|C|1701, 6Z6L|1|S2|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6L_258 not in the Motif Atlas

Homologous match to IL_4V88_463

Geometric discrepancy: 0.1143

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

6Z6L|1|S2|C|1700
6Z6L|1|S2|C|1701
6Z6L|1|S2|G|1702
*
6Z6L|1|S2|C|1833
6Z6L|1|S2|A|1834
6Z6L|1|S2|A|1835
6Z6L|1|S2|G|1836

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Sa

40S ribosomal protein S26