IL_6Z6L_260

3D structure

PDB id

6Z6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human CCDC124 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6L_260 not in the Motif Atlas

Geometric match to IL_4E48_004

Geometric discrepancy: 0.1295

The information below is about IL_4E48_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

6Z6L|1|S2|G|1706
6Z6L|1|S2|U|1707
6Z6L|1|S2|C|1708
*
6Z6L|1|S2|G|1826
6Z6L|1|S2|U|1827
6Z6L|1|S2|C|1828

Current chains

Chain S2

18S rRNA

Nearby chains

Chain CE

Coiled-coil domain-containing protein 124

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain Ln

60S ribosomal protein L41