IL_6Z6L_286

3D structure

PDB id

6Z6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human CCDC124 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAC*GUCCCCCA

Length

11 nucleotides

Bulged bases

6Z6L|1|S2|C|1433, 6Z6L|1|S2|C|1434, 6Z6L|1|S2|C|1437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6L_286 not in the Motif Atlas

Homologous match to IL_8C3A_464

Geometric discrepancy: 0.4302

The information below is about IL_8C3A_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

6Z6L|1|S2|U|1408
6Z6L|1|S2|A|1409
6Z6L|1|S2|C|1410
*
6Z6L|1|S2|G|1431
6Z6L|1|S2|U|1432
6Z6L|1|S2|C|1433
6Z6L|1|S2|C|1434
6Z6L|1|S2|C|1435
6Z6L|1|S2|C|1436
6Z6L|1|S2|C|1437
6Z6L|1|S2|A|1438

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain SU

40S ribosomal protein S20