IL_6Z6M_027

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGUC*GACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6M_027 not in the Motif Atlas

Geometric match to IL_8C3A_009

Geometric discrepancy: 0.3979

The information below is about IL_8C3A_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90170.1

Basepair signature

cWW-L-R-L-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6Z6M|1|L5|G|491
6Z6M|1|L5|U|492
6Z6M|1|L5|G|493
6Z6M|1|L5|U|494
6Z6M|1|L5|C|495
*
6Z6M|1|L5|G|659
6Z6M|1|L5|A|660
6Z6M|1|L5|C|661
6Z6M|1|L5|C|662

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4