IL_6Z6M_109

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

6Z6M|1|L5|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6M_109 not in the Motif Atlas

Homologous match to IL_8C3A_083

Geometric discrepancy: 0.094

The information below is about IL_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6Z6M|1|L5|A|2850
6Z6M|1|L5|G|2851
6Z6M|1|L5|U|2852
6Z6M|1|L5|C|2853
6Z6M|1|L5|G|2854
6Z6M|1|L5|G|2855
*
6Z6M|1|L5|C|3837
6Z6M|1|L5|U|3838
6Z6M|1|L5|G|3839
6Z6M|1|L5|U|3840

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23