IL_6Z6M_124

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCGG*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6M_124 not in the Motif Atlas

Homologous match to IL_5TBW_091

Geometric discrepancy: 0.0908

The information below is about IL_5TBW_091

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6Z6M|1|L5|G|3895
6Z6M|1|L5|C|3896
6Z6M|1|L5|G|3897
6Z6M|1|L5|G|3898
*
6Z6M|1|L5|U|4563
6Z6M|1|L5|A|4564
6Z6M|1|L5|C|4565

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L13a