IL_6Z6M_262
3D structure
- PDB id
- 6Z6M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCG*CAAG
- Length
- 7 nucleotides
- Bulged bases
- 6Z6M|1|S2|C|1701, 6Z6M|1|S2|A|1835
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Z6M_262 not in the Motif Atlas
- Homologous match to IL_4V88_463
- Geometric discrepancy: 0.1365
- The information below is about IL_4V88_463
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61438.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
6Z6M|1|S2|C|1700
6Z6M|1|S2|C|1701
6Z6M|1|S2|G|1702
*
6Z6M|1|S2|C|1833
6Z6M|1|S2|A|1834
6Z6M|1|S2|A|1835
6Z6M|1|S2|G|1836
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain CC
- Transfer RNA; tRNA
- Chain CD
- Plasminogen activator inhibitor 1 RNA-binding protein
- Chain SC
- 40S ribosomal protein S2
- Chain Sa
- 40S ribosomal protein S26
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