IL_6Z6N_021

3D structure

PDB id

6Z6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6N_021 not in the Motif Atlas

Geometric match to IL_1SI3_001

Geometric discrepancy: 0.1403

The information below is about IL_1SI3_001

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_87720.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

8

Unit IDs

6Z6N|1|L5|G|462
6Z6N|1|L5|A|463
6Z6N|1|L5|G|464
*
6Z6N|1|L5|C|691
6Z6N|1|L5|A|692
6Z6N|1|L5|C|693

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain Lr

60S ribosomal protein L28