IL_6Z6N_028

3D structure

PDB id

6Z6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCCCGG*UC

Length

8 nucleotides

Bulged bases

6Z6N|1|L5|C|501, 6Z6N|1|L5|C|502, 6Z6N|1|L5|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6N_028 not in the Motif Atlas

Geometric match to IL_6CZR_119

Geometric discrepancy: 0.3121

The information below is about IL_6CZR_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_33761.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

6Z6N|1|L5|G|500
6Z6N|1|L5|C|501
6Z6N|1|L5|C|502
6Z6N|1|L5|C|503
6Z6N|1|L5|G|504
6Z6N|1|L5|G|505
*
6Z6N|1|L5|U|653
6Z6N|1|L5|C|654

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LQ

60S ribosomal protein L18