IL_6Z6N_060

3D structure

PDB id

6Z6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6N_060 not in the Motif Atlas

Homologous match to IL_8C3A_033

Geometric discrepancy: 0.1087

The information below is about IL_8C3A_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6Z6N|1|L5|C|1551
6Z6N|1|L5|G|1552
6Z6N|1|L5|A|1553
6Z6N|1|L5|A|1554
6Z6N|1|L5|G|1555
*
6Z6N|1|L5|U|1572
6Z6N|1|L5|G|1573
6Z6N|1|L5|G|1574
6Z6N|1|L5|A|1575
6Z6N|1|L5|G|1576

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LR

60S ribosomal protein L19

Chain Lp

60S ribosomal protein L37a