IL_6Z6N_074

3D structure

PDB id

6Z6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUGG*UCA

Length

7 nucleotides

Bulged bases

6Z6N|1|L5|U|1757

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6N_074 not in the Motif Atlas

Geometric match to IL_1L9A_007

Geometric discrepancy: 0.3073

The information below is about IL_1L9A_007

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

6Z6N|1|L5|U|1756
6Z6N|1|L5|U|1757
6Z6N|1|L5|G|1758
6Z6N|1|L5|G|1759
*
6Z6N|1|L5|U|1773
6Z6N|1|L5|C|1774
6Z6N|1|L5|A|1775

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LI

60S ribosomal protein L10-like