IL_6Z6N_078
3D structure
- PDB id
- 6Z6N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUAAG*CCAUA
- Length
- 10 nucleotides
- Bulged bases
- 6Z6N|1|L5|U|2070
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Z6N_078 not in the Motif Atlas
- Homologous match to IL_8C3A_051
- Geometric discrepancy: 0.085
- The information below is about IL_8C3A_051
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
6Z6N|1|L5|U|1905
6Z6N|1|L5|U|1906
6Z6N|1|L5|A|1907
6Z6N|1|L5|A|1908
6Z6N|1|L5|G|1909
*
6Z6N|1|L5|C|2067
6Z6N|1|L5|C|2068
6Z6N|1|L5|A|2069
6Z6N|1|L5|U|2070
6Z6N|1|L5|A|2071
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L7
- 5S ribosomal RNA; 5S rRNA
- Chain LF
- 60S ribosomal protein L7
- Chain LQ
- 60S ribosomal protein L18
- Chain Le
- 60S ribosomal protein L32
- Chain Lf
- 60S ribosomal protein L35a
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