IL_6Z6N_110

3D structure

PDB id

6Z6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

6Z6N|1|L5|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6N_110 not in the Motif Atlas

Geometric match to IL_4V9F_062

Geometric discrepancy: 0.0922

The information below is about IL_4V9F_062

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_28217.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

6Z6N|1|L5|A|2850
6Z6N|1|L5|G|2851
6Z6N|1|L5|U|2852
6Z6N|1|L5|C|2853
6Z6N|1|L5|G|2854
6Z6N|1|L5|G|2855
*
6Z6N|1|L5|C|3837
6Z6N|1|L5|U|3838
6Z6N|1|L5|G|3839
6Z6N|1|L5|U|3840

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23