IL_6Z6N_195

3D structure

PDB id

6Z6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6N_195 not in the Motif Atlas

Geometric match to IL_6RA4_002

Geometric discrepancy: 0.1175

The information below is about IL_6RA4_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

6Z6N|1|S2|U|152
6Z6N|1|S2|G|153
6Z6N|1|S2|U|154
*
6Z6N|1|S2|A|164
6Z6N|1|S2|G|165
6Z6N|1|S2|A|166

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6

Chain SY

40S ribosomal protein S24