IL_6Z6N_219

3D structure

PDB id

6Z6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

6Z6N|1|S2|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6N_219 not in the Motif Atlas

Geometric match to IL_4LFB_022

Geometric discrepancy: 0.1066

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

6Z6N|1|S2|G|665
6Z6N|1|S2|U|666
6Z6N|1|S2|U|667
6Z6N|1|S2|A|668
6Z6N|1|S2|A|669
6Z6N|1|S2|A|670
6Z6N|1|S2|A|671
*
6Z6N|1|S2|U|1161
6Z6N|1|S2|C|1162

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SX

40S ribosomal protein S23

Chain Sa

40S ribosomal protein S26