IL_6Z6N_251
3D structure
- PDB id
- 6Z6N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGCAU*AUGC
- Length
- 10 nucleotides
- Bulged bases
- 6Z6N|1|S2|C|1331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Z6N_251 not in the Motif Atlas
- Geometric match to IL_4V88_473
- Geometric discrepancy: 0.2481
- The information below is about IL_4V88_473
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_36174.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
6Z6N|1|S2|G|1328
6Z6N|1|S2|U|1329
6Z6N|1|S2|G|1330
6Z6N|1|S2|C|1331
6Z6N|1|S2|A|1332
6Z6N|1|S2|U|1333
*
6Z6N|1|S2|A|1498
6Z6N|1|S2|U|1499
6Z6N|1|S2|G|1500
6Z6N|1|S2|C|1501
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain CD
- Plasminogen activator inhibitor 1 RNA-binding protein
- Chain SD
- 40S ribosomal protein S3
- Chain SK
- 40S ribosomal protein S10
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
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