IL_6ZCE_010

3D structure

PDB id

6ZCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UUAUUU*AUUCA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZCE_010 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.1536

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

6ZCE|1|A|U|117
6ZCE|1|A|U|118
6ZCE|1|A|A|119
6ZCE|1|A|U|120
6ZCE|1|A|U|121
6ZCE|1|A|U|122
*
6ZCE|1|A|A|295
6ZCE|1|A|U|296
6ZCE|1|A|U|297
6ZCE|1|A|C|298
6ZCE|1|A|A|299

Current chains

Chain A

18S ribosomal RNA (1719-MER)

Nearby chains

Chain F

40S ribosomal protein S4-A

Chain J

40S ribosomal protein S8-A