IL_6ZCE_014

3D structure

PDB id

6ZCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

6ZCE|1|A|U|260

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZCE_014 not in the Motif Atlas

Homologous match to IL_4V88_397

Geometric discrepancy: 0.2365

The information below is about IL_4V88_397

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6ZCE|1|A|G|204
6ZCE|1|A|U|205
6ZCE|1|A|A|206
*
6ZCE|1|A|U|259
6ZCE|1|A|U|260
6ZCE|1|A|U|261
6ZCE|1|A|U|262
6ZCE|1|A|C|263

Current chains

Chain A

18S ribosomal RNA (1719-MER)

Nearby chains

Chain F

40S ribosomal protein S4-A

Chain J

40S ribosomal protein S8-A